Interactive Visual Tools for Multiple Sequence Alignment Versions 2.0
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Author:
MUHAMMAD ASHFAQ
Citable URI :
https://vspace.vu.edu.pk/detail.aspx?id=105
Publisher :
Virtual University
Date Issued:
11/29/2017 12:00:00 AM
Abstract
IVisTMSA Version 2.0 (Interactive Visual Tools for Multiple Sequence Alignments Version 2.0) is visual tool in support of control, analysis, editing as well as annotation of several sequence association. The proposed version offers several analysis and editing features. Firstly, it shows sequence annotation in graphical form such as tooltips to show certain information, highlighting matches, mismatches, gaps and Highlight significant sequence place of residues phosphorylated/glycosylated. Secondly, it allows the user to lock sequences for synchronized hand alignment adjustments and prevent accidental edits. Thirdly, it also permits the user to calculate protein hydrophobicity / hydrophilicity plot. Fourthly, show chart view in sequences and alignment wise. Fifthly, it also allows the user to import of compatible formats directly from the clipboard without saving to a file first. Other features include downloading sequences from EMBL/GenBank/UniProt. IVisTMSA Version 2.0 has been developed using Java programing language and Netbeans IDE 8.0.
URI :
https://vspace.vu.edu.pk/details.aspx?id=105
Citation:
Ashfaq, M. (2017). Interactive Visual Tools for Multiple Sequence Alignment Versions 2.0, Virtual University of Pakistan, (Lahore, Pakistan).
Version :
Final Version
Terms of Use :
All the material and results are copyright of Virtual University of Pakistan
Detailed Terms :
Journal :
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Fall 2016_CS720_MS150200320.pdf |
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